U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    sinhcafl SIN3-HDAC complex associated factor, like [ Danio rerio (zebrafish) ]

    Gene ID: 386721, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    sinhcaflprovided by ZNC
    Official Full Name
    SIN3-HDAC complex associated factor, likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031114-2
    See related
    Ensembl:ENSDARG00000078118 AllianceGenome:ZFIN:ZDB-GENE-031114-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    TERA; fam60a; fam60al; C12orf14; zgc:66459; sinhcaflas; wu:fb72g07; wu:fc93f01
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sinhcafl in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (64961931..64971355, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (64737269..64745274, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 21 Neighboring gene adhesion G protein-coupled receptor G3 Neighboring gene DENN/MADD domain containing 5A Neighboring gene transmembrane protein 41B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Fam60al as a novel factor involved in reprogramming of somatic cell nuclear transfer in zebrafish (Danio rerio). Hu H, et al. Int J Biol Sci, 2018. PMID 29483827, Free PMC Article
    2. Maternal methylmercury from a wild-caught walleye diet induces developmental abnormalities in zebrafish. Liu Q, et al. Reprod Toxicol, 2016 Oct. PMID 27544571
    3. Identification and Expression Analysis of the Complete Family of Zebrafish pkd Genes. England SJ, et al. Front Cell Dev Biol, 2017. PMID 28271061, Free PMC Article
    4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SIN3-HDAC complex associated factor, like
    Names
    fam60al -AS
    family with sequence similarity 60, member A, like
    sinhcafl antisense lncRNA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001353917.1 → NP_001340846.1  SIN3-HDAC complex associated factor, like isoform 2

      Status: VALIDATED

      Source sequence(s)
      CABZ01056055, EH545323, EH556394, EH566456, EH569022, LO018393
      Related
      ENSDARP00000138633.1, ENSDART00000164682.3
      Conserved Domains (1) summary
      pfam15396
      Location:2 → 193
      FAM60A; Protein Family FAM60A

    2. NM_198825.4 → NP_942120.3  SIN3-HDAC complex associated factor, like isoform 1

      Status: VALIDATED

      Source sequence(s)
      CABZ01056055, EH545323, EH566456, EH569022, LO018393
      UniProtKB/TrEMBL
      A0A8M1PB98

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      64961931..64971355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.