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    cdv3 carnitine deficiency-associated gene expressed in ventricle 3 [ Danio rerio (zebrafish) ]

    Gene ID: 334102, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cdv3provided by ZNC
    Official Full Name
    carnitine deficiency-associated gene expressed in ventricle 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6034
    See related
    Ensembl:ENSDARG00000023028 AllianceGenome:ZFIN:ZDB-GENE-030131-6034
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc34e05; wu:fa12e09; wu:fb78g07; wu:fc34e05; wu:fi31e11
    Summary
    Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; myotome; and retina. Orthologous to human CDV3 (CDV3 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cdv3 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (9881268..9893795)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (9740838..9753409)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene transmembrane protein 108 Neighboring gene VPS41 subunit of HOPS complex Neighboring gene zgc:171977

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. TopBP1 Governs Hematopoietic Stem/Progenitor Cells Survival in Zebrafish Definitive Hematopoiesis. Gao L, et al. PLoS Genet, 2015 Jul. PMID 26131719, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein CDV3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212721.1 → NP_997886.1  protein CDV3 homolog

      See identical proteins and their annotated locations for NP_997886.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053231
      UniProtKB/Swiss-Prot
      Q7T370
      Related
      ENSDARP00000031228.4, ENSDART00000036204.5
      Conserved Domains (1) summary
      pfam15359
      Location:69 → 187
      CDV3; Carnitine deficiency-associated protein 3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      9881268..9893795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162562.4 → XP_005162619.1  protein CDV3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M2B9L1
      Conserved Domains (1) summary
      pfam15359
      Location:69 → 187
      CDV3; Carnitine deficiency-associated protein 3

    2. XM_009297288.4 → XP_009295563.1  protein CDV3 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M3AYZ8
      Conserved Domains (1) summary
      pfam15359
      Location:69 → 186
      CDV3; Carnitine deficiency-associated protein 3

    3. XM_068217032.1 → XP_068073133.1  protein CDV3 homolog isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7T370.1 GenPept UniProtKB/Swiss-Prot:Q7T370

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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