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    fam136a family with sequence similarity 136 member A [ Danio rerio (zebrafish) ]

    Gene ID: 406709, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fam136aprovided by ZNC
    Official Full Name
    family with sequence similarity 136 member Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2729
    See related
    Ensembl:ENSDARG00000098401 AllianceGenome:ZFIN:ZDB-GENE-040426-2729
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:73247; wu:fb72f05; ik:tdsubc_1a11; xx:tdsubc_1a11
    Summary
    Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; musculature system; and optic tectum. Orthologous to human FAM136A (family with sequence similarity 136 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See fam136a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (7671260..7672959)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (7712560..7714259)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene surfactant protein Ba Neighboring gene histidine triad nucleotide binding protein 1 Neighboring gene prenylcysteine oxidase 1 Neighboring gene germ cell-less, spermatogenesis associated Neighboring gene gamma-glutamyl carboxylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. FACS-assisted microarray profiling implicates novel genes and pathways in zebrafish gastrointestinal tract development. Stuckenholz C, et al. Gastroenterology, 2009 Oct. PMID 19563808, Free PMC Article
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM136A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213400.1 → NP_998565.1  protein FAM136A

      See identical proteins and their annotated locations for NP_998565.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059586
      UniProtKB/Swiss-Prot
      Q6PBU0
      Related
      ENSDARP00000133287.1, ENSDART00000157608.2
      Conserved Domains (1) summary
      pfam05811
      Location:5 → 127
      DUF842; Eukaryotic protein of unknown function (DUF842)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      7671260..7672959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PBU0.1 GenPept UniProtKB/Swiss-Prot:Q6PBU0

    Gene LinkOut

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