atxn7l3b ataxin 7 like 3b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atxn7l3bprovided by ZNC
Official Full Name: ataxin 7 like 3bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7685
See related: Ensembl:ENSDARG00000079131 AllianceGenome:ZFIN:ZDB-GENE-030131-7685
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fm52d09; wu:fm52d09; si:dkeyp-118b1.2
Summary: Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be part of DUBm complex and SAGA complex. Orthologous to human ATXN7L3 (ataxin 7 like 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 12

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	12	NC_007123.7 (10115895..10129697)
105	previous assembly	GRCz10 (GCF_000002035.5)	12	NC_007123.6 (10078039..10091854)

Chromosome 12 - NC_007123.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transcription coactivator activity	IBA Inferred from Biological aspect of Ancestor more info
enables transcription coactivator activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of DUBm complex	IBA Inferred from Biological aspect of Ancestor more info
part_of DUBm complex	IEA Inferred from Electronic Annotation more info
part_of SAGA complex	IBA Inferred from Biological aspect of Ancestor more info
part_of SAGA complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC559983

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001326694.1 → NP_001313623.1 uncharacterized protein LOC559983

Status: VALIDATED

Source sequence(s)

BX547998, CU459020

UniProtKB/TrEMBL

A0A8M1P3K8, E7FC00

Related

ENSDARP00000126649.1, ENSDART00000152369.2

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007123.7 Reference GRCz11 Primary Assembly

Range

10115895..10129697

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005156092.5 → XP_005156149.1 uncharacterized protein LOC559983 isoform X1

UniProtKB/TrEMBL

A0A8M2B264

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)
XM_005156094.5 → XP_005156151.1 uncharacterized protein LOC559983 isoform X3

UniProtKB/TrEMBL

A0A8M2B2F1

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)
XM_005156093.5 → XP_005156150.1 uncharacterized protein LOC559983 isoform X2

UniProtKB/TrEMBL

A0A8M2B235

Related

ENSDARP00000148905.1, ENSDART00000189630.1

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)