s100u S100 calcium binding protein U [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: s100uprovided by ZNC
Official Full Name: S100 calcium binding protein Uprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3121
See related: Ensembl:ENSDARG00000071014 AllianceGenome:ZFIN:ZDB-GENE-030131-3121
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc27g02; wu:fc27g02; si:dkey-105n5.2
Summary: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill and gut. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (7575341..7591062)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (7656416..7672137)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc27g02.x1 (e-PCR)
- UniSTS:193371

fc27g02.x1 (e-PCR)
- UniSTS:193372

fb40h04.x1 (e-PCR)
- UniSTS:190573

fj22d11.y1 (e-PCR)
- UniSTS:198794

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables calcium-dependent protein binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
is_active_in perinuclear region of cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: S100 calcium binding protein U

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128341.1 → NP_001121813.1 S100 calcium binding protein U

Status: PROVISIONAL

Source sequence(s)

CT573133

UniProtKB/TrEMBL

A0A8M1NJX2, A5WW31

Related

ENSDARP00000119966.1, ENSDART00000134271.2

Conserved Domains (1) summary

cl08302
Location:1 → 88

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...