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    wu:fb13g09 wu:fb13g09 [ Danio rerio (zebrafish) ]

    Gene ID: 336563, updated on 9-Dec-2024

    Summary

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    Official Symbol
    wu:fb13g09provided by ZNC
    Official Full Name
    wu:fb13g09provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8507
    See related
    Ensembl:ENSDARG00000076547 AllianceGenome:ZFIN:ZDB-GENE-030131-8507
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb13g09
    Summary
    Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See wu:fb13g09 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (23518138..23592880)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (23220882..23294555)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487586 Neighboring gene ecto-NOX disulfide-thiol exchanger 2 Neighboring gene mediator complex subunit 12 Neighboring gene methionyl-tRNA synthetase 2, mitochondrial Neighboring gene heat shock protein 4b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family C member 5; uncharacterized protein LOC336563

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      23518138..23592880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017359119.3 → XP_017214608.1  ATP-binding cassette sub-family C member 5

      UniProtKB/TrEMBL
      A0A0R4IV86, A0A8M9Q1E7
      Conserved Domains (1) summary
      cl26602
      Location:61 → 1386
      SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

    2. XM_009291055.4 → XP_009289330.1  ATP-binding cassette sub-family C member 5

      See identical proteins and their annotated locations for XP_009289330.1

      UniProtKB/TrEMBL
      A0A0R4IV86, A0A8M9Q1E7
      Related
      ENSDARP00000141383.1, ENSDART00000170473.2
      Conserved Domains (1) summary
      cl26602
      Location:61 → 1386
      SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394907.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      95082..169815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472781.2 → XP_021328456.1  ATP-binding cassette sub-family C member 5

      UniProtKB/TrEMBL
      A0A0R4IV86, A0A8M9Q1E7
      Conserved Domains (1) summary
      cl26602
      Location:61 → 1386
      SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

    2. XM_021472780.2 → XP_021328455.1  ATP-binding cassette sub-family C member 5

      UniProtKB/TrEMBL
      A0A0R4IV86, A0A8M9Q1E7
      Conserved Domains (1) summary
      cl26602
      Location:61 → 1386
      SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395314.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      1566..73732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474304.2 → XP_021329979.1  ATP-binding cassette sub-family C member 5

      UniProtKB/TrEMBL
      A0A0R4IV86, A0A8M9Q1E7
      Conserved Domains (1) summary
      cl26602
      Location:61 → 1386
      SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
    Nucleotide Protein Strain
    Heading Accession and Version

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