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    ccdc187 coiled-coil domain containing 187 [ Danio rerio (zebrafish) ]

    Gene ID: 100037381, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ccdc187provided by ZNC
    Official Full Name
    coiled-coil domain containing 187provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070410-81
    See related
    Ensembl:ENSDARG00000053857 AllianceGenome:ZFIN:ZDB-GENE-070410-81
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162431
    Orthologs
    all
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    Genomic context

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    See ccdc187 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (30013240..30045697, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (30086710..30119168, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene dishevelled segment polarity protein 1a Neighboring gene tumor necrosis factor receptor superfamily, member 9a Neighboring gene uncharacterized LOC103909694 Neighboring gene uncharacterized LOC137489186 Neighboring gene urotensin 2, alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089533.2 → NP_001083002.2  coiled-coil domain-containing protein 187 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BX663608
      UniProtKB/TrEMBL
      A4QNZ6
      Related
      ENSDARP00000094256.2, ENSDART00000103480.4

    2. NM_001430812.1 → NP_001417741.1  coiled-coil domain-containing protein 187 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX663608
      UniProtKB/TrEMBL
      A0A8M2B967

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      30013240..30045697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021469714.2 → XP_021325389.1  coiled-coil domain-containing protein 187 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PKI4
      Conserved Domains (1) summary
      pfam15295
      Location:7 → 106
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    2. XM_021469712.2 → XP_021325387.1  coiled-coil domain-containing protein 187 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B9D9
      Conserved Domains (1) summary
      pfam15295
      Location:31 → 140
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    3. XM_005162291.5 → XP_005162348.1  coiled-coil domain-containing protein 187 isoform X1

      See identical proteins and their annotated locations for XP_005162348.1

      UniProtKB/TrEMBL
      A0A8M2B9D9
      Conserved Domains (1) summary
      pfam15295
      Location:31 → 140
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    4. XM_068216645.1 → XP_068072746.1  coiled-coil domain-containing protein 187 isoform X2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395157.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      40748..73190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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