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    znf142 zinc finger protein 142 [ Danio rerio (zebrafish) ]

    Gene ID: 561536, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf142provided by ZNC
    Official Full Name
    zinc finger protein 142provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080512-2
    See related
    Ensembl:ENSDARG00000061373 AllianceGenome:ZFIN:ZDB-GENE-080512-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in telencephalon. Orthologous to human ZNF142 (zinc finger protein 142). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See znf142 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (38390000..38399430, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (38580206..38589645, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 93 Neighboring gene phospholipase C, delta 4b Neighboring gene BC1 (ubiquinol-cytochrome c reductase) synthesis-like Neighboring gene cytochrome P450, family 27, subfamily A, polypeptide 1.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. microRNA-206 modulates an Rtn4a/Cxcr4a/Thbs3a axis in newly forming somites to maintain and stabilize the somite boundary formation of zebrafish embryos. Lin CY, et al. Open Biol, 2017 Jul. PMID 28701377, Free PMC Article
    2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 142

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      38390000..38399430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684944.9 → XP_690036.3  zinc finger protein 142

      UniProtKB/TrEMBL
      A0A8N7UVU4, E9QCQ3
      Related
      ENSDARP00000116080.1, ENSDART00000148268.2
      Conserved Domains (3) summary
      COG5048
      Location:80 → 503
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:1411 → 1431
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1078 → 1098
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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