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    zgc:113162 zgc:113162 [ Danio rerio (zebrafish) ]

    Gene ID: 553743, updated on 4-Jan-2025

    Summary

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    Official Symbol
    zgc:113162provided by ZNC
    Official Full Name
    zgc:113162provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-530
    See related
    Ensembl:ENSDARG00000052923 AllianceGenome:ZFIN:ZDB-GENE-050522-530
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See zgc:113162 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (13383402..13432544)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (13288652..13335434)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein D3 polypeptide, like Neighboring gene calcium/calmodulin-dependent protein kinase kinase 2 Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor a Neighboring gene si:dkey-248f6.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC113162

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC553743

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020714.2 → NP_001018550.2  uncharacterized protein LOC553743

      Status: VALIDATED

      Source sequence(s)
      BX548161, CU694957
      UniProtKB/TrEMBL
      Q501U2
      Related
      ENSDARP00000122091.2, ENSDART00000134347.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      13383402..13432544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215872.1 → XP_068071973.1  uncharacterized protein LOC553743 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P3B5, Q501U2

    2. XM_068215873.1 → XP_068071974.1  uncharacterized protein LOC553743 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P3B5, Q501U2
    Nucleotide Protein Strain
    Heading Accession and Version

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