U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:ch211-158d24.2 si:ch211-158d24.2 [ Danio rerio (zebrafish) ]

    Gene ID: 560805, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:ch211-158d24.2provided by ZNC
    Official Full Name
    si:ch211-158d24.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081105-115
    See related
    Ensembl:ENSDARG00000078536 AllianceGenome:ZFIN:ZDB-GENE-081105-115
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be an extracellular matrix structural constituent. Predicted to be involved in animal organ morphogenesis; axon guidance; and tissue development. Predicted to be located in membrane. Predicted to be active in basement membrane. Orthologous to human MEGF9 (multiple EGF like domains 9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:ch211-158d24.2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (41533260..41614478)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (41525566..41603048)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496380 Neighboring gene golgin A1 Neighboring gene uncharacterized LOC103911555 Neighboring gene si:ch211-158d24.4 Neighboring gene GDNF family receptor alpha 2a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    multiple epidermal growth factor-like domains protein 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      41533260..41614478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684205.10 → XP_689297.6  multiple epidermal growth factor-like domains protein 9

      UniProtKB/TrEMBL
      A0A8N7TEX5
      Related
      ENSDARP00000112621.1, ENSDART00000142377.2
      Conserved Domains (2) summary
      smart00180
      Location:201 → 245
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:152 → 191
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials