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    si:ch73-335l21.4 si:ch73-335l21.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100000332, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch73-335l21.4provided by ZNC
    Official Full Name
    si:ch73-335l21.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160728-105
    See related
    Ensembl:ENSDARG00000091234 AllianceGenome:ZFIN:ZDB-GENE-160728-105
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF227 (ring finger protein 227). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See si:ch73-335l21.4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (20239922..20241413, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19987954..19989409, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch73-335l21.1 Neighboring gene serine-rich adhesin for platelets Neighboring gene si:ch73-335l21.2 Neighboring gene dishevelled segment polarity protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase-like
    NP_001373656.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386727.1NP_001373656.1  E3 ubiquitin-protein ligase-like

      Status: VALIDATED

      Source sequence(s)
      CU019646
      UniProtKB/TrEMBL
      A0A8M1QKS7, E7EYM0
      Related
      ENSDARP00000111797.1, ENSDART00000127699.4
      Conserved Domains (2) summary
      cd00162
      Location:754
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:658
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      20239922..20241413 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)