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    ccdc6b coiled-coil domain containing 6b [ Danio rerio (zebrafish) ]

    Gene ID: 393211, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc6bprovided by ZNC
    Official Full Name
    coiled-coil domain containing 6bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-869
    See related
    Ensembl:ENSDARG00000017595 AllianceGenome:ZFIN:ZDB-GENE-040426-869
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc6; ccdc6l; zgc:56030; wu:fd21g03
    Summary
    Orthologous to human CCDC6 (coiled-coil domain containing 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc6b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (7609923..7639120, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (7577404..7604993, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene si:ch73-51i5.2 Neighboring gene solute carrier family 16 member 9b Neighboring gene ankyrin 3b Neighboring gene Rho related BTB domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC56030, MGC153497

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 6b
    Names
    coiled-coil domain containing 6, like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200241.2 → NP_956535.2  coiled-coil domain-containing protein 6b

      Status: VALIDATED

      Source sequence(s)
      FQ311940
      UniProtKB/TrEMBL
      A0A8M1PE86, A0AUQ3
      Related
      ENSDARP00000108416.1, ENSDART00000126712.3
      Conserved Domains (2) summary
      pfam09755
      Location:31 → 315
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      cl00259
      Location:95 → 184
      Sm_like; Sm and related proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      7609923..7639120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224533.1 → XP_068080634.1  coiled-coil domain-containing protein 6b isoform X1

      UniProtKB/TrEMBL
      A0A8M1PE86, A0AUQ3
    Nucleotide Protein Strain
    Heading Accession and Version

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