atp6v1d ATPase H+ transporting V1 subunit D [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atp6v1dprovided by ZNC
Official Full Name: ATPase H+ transporting V1 subunit Dprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-727
See related: Ensembl:ENSDARG00000011175 AllianceGenome:ZFIN:ZDB-GENE-040426-727
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:55524
Summary: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to act upstream of or within monoatomic ion transport. Predicted to be located in clathrin-coated vesicle membrane. Predicted to be part of proton-transporting V-type ATPase complex. Is expressed in several structures, including blood; epiphysis; liver; mucus secreting cell; and yolk syncytial layer. Orthologous to human ATP6V1D (ATPase H+ transporting V1 subunit D). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 20

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (51088606..51100669, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (51275386..51287449, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables proton-transporting ATPase activity, rotational mechanism	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in clathrin-coated vesicle membrane	IEA Inferred from Electronic Annotation more info
part_of proton-transporting V-type ATPase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: V-type proton ATPase subunit D

Names: ATPase, H+ transporting, lysosomal V1 subunit D

NP_001161426.1

EC 7.1.2.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.