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    zgc:112399 zgc:112399 [ Danio rerio (zebrafish) ]

    Gene ID: 554121, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:112399provided by ZNC
    Official Full Name
    zgc:112399provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-326
    See related
    Ensembl:ENSDARG00000109703 AllianceGenome:ZFIN:ZDB-GENE-050522-326
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Is expressed in proliferative region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See zgc:112399 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (50039536..50040985, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (49978632..49993730, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene filamin A interacting protein 1a Neighboring gene zinc finger protein 664-like Neighboring gene zgc:100951 Neighboring gene zgc:173816

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC554121; zinc finger protein 239; zinc finger protein 271

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      50039536..50040985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214696.1 → XP_068070797.1  zinc finger protein 239 isoform X3

    2. XM_068214695.1 → XP_068070796.1  zinc finger protein 271 isoform X2

    3. XM_068214694.1 → XP_068070795.1  zinc finger protein 271 isoform X1

      Related
      ENSDARP00000148872.1, ENSDART00000184304.1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001024416.1: Suppressed sequence

      Description
      NM_001024416.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ZNF808 (GeneID:388558).
    Nucleotide Protein
    Heading Accession and Version

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