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    si:ch211-266o15.1 si:ch211-266o15.1 [ Danio rerio (zebrafish) ]

    Gene ID: 560900, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-266o15.1provided by ZNC
    Official Full Name
    si:ch211-266o15.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131127-116
    See related
    Ensembl:ENSDARG00000057681 AllianceGenome:ZFIN:ZDB-GENE-131127-116
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable zinc ion binding activity. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-266o15.1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (14731317..14780512, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (14723367..14772619, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase 4A2a Neighboring gene gap junction protein beta 9a Neighboring gene RNA transcription, translation and transport factor Neighboring gene nidogen 2a (osteonidogen)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYM-type protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      14731317..14780512 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292901.4 → XP_009291176.1  zinc finger MYM-type protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AIS7
      Conserved Domains (4) summary
      pfam06467
      Location:279 → 319
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1264 → 1431
      DUF3504; Domain of unknown function (DUF3504)
      pfam14650
      Location:191 → 292
      FAM75; FAM75 family
      pfam16712
      Location:69 → 107
      SCAB_CC; Coiled-coil regions of plant-specific actin-binding protein

    2. XM_009292902.4 → XP_009291177.1  zinc finger MYM-type protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8M3B288, X1WH87
      Related
      ENSDARP00000129599.1, ENSDART00000154690.2
      Conserved Domains (4) summary
      pfam06467
      Location:279 → 319
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1264 → 1431
      DUF3504; Domain of unknown function (DUF3504)
      pfam14650
      Location:191 → 292
      FAM75; FAM75 family
      pfam16712
      Location:69 → 107
      SCAB_CC; Coiled-coil regions of plant-specific actin-binding protein

    3. XM_684300.10 → XP_689392.5  zinc finger MYM-type protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8N7UQY1, E7FA89
      Related
      ENSDARP00000074851.4, ENSDART00000080401.7
      Conserved Domains (4) summary
      pfam06467
      Location:279 → 319
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1265 → 1432
      DUF3504; Domain of unknown function (DUF3504)
      pfam14650
      Location:191 → 292
      FAM75; FAM75 family
      pfam16712
      Location:69 → 107
      SCAB_CC; Coiled-coil regions of plant-specific actin-binding protein
    Nucleotide Protein
    Heading Accession and Version

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