U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    igl1c1 immunoglobulin light 1 constant 1 [ Danio rerio (zebrafish) ]

    Gene ID: 101884804, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    igl1c1provided by ZNC
    Official Full Name
    immunoglobulin light 1 constant 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-111021-9
    See related
    Ensembl:ENSDARG00000069839 AllianceGenome:ZFIN:ZDB-GENE-111021-9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    NLC106; igic2s2
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See igl1c1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (58675886..58680051)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (58606853..58620762)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene stonustoxin subunit beta-like Neighboring gene dehydrogenase/reductase (SDR family) member 7Ca Neighboring gene NACHT, LRR and PYD domains-containing protein 5-like Neighboring gene immunoglobulin light 1 variable 11

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (V(L)-J(L)-C(L)) gene clusters. Zimmerman AM, et al. Dev Comp Immunol, 2008. PMID 18022691, Free PMC Article
    2. Targeted annotation of immunoglobulin light chain (IgL) genes in zebrafish from BAC clones reveals kappa-like recombining/deleting elements within IgL constant regions. Zimmerman AM, et al. Fish Shellfish Immunol, 2011 Nov. PMID 20933599
    3. Characterization of three isotypes of immunoglobulin light chains and T-cell antigen receptor alpha in zebrafish. Haire RN, et al. Immunogenetics, 2000 Sep. PMID 11003385
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    T-cell receptor beta chain V region A20.2.25; immunoglobulin lambda-1 light chain
    Names
    immunoglobulin light chain VJC region
    immunoglobulin light chain constant region
    immunoglobulin light iota constant 2, s2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      58675886..58680051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474765.2 → XP_021330440.1  immunoglobulin lambda-1 light chain

      Related
      ENSDART00000101970.5
      Conserved Domains (2) summary
      cd07699
      Location:137 → 234
      IgC_L; Immunoglobulin Constant domain
      cl11960
      Location:21 → 130
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials