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    PI4KAP1 phosphatidylinositol 4-kinase alpha pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 728233, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PI4KAP1provided by HGNC
    Official Full Name
    phosphatidylinositol 4-kinase alpha pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:33576
    See related
    Ensembl:ENSG00000290425 AllianceGenome:HGNC:33576
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in placenta (RPKM 21.8), brain (RPKM 17.9) and 25 other tissues See more
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    Genomic context

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    See PI4KAP1 in Genome Data Viewer
    Location:
    22q11.21
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18533864..18548828, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (20383731..20398695, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase light chain family member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:20377409-20377989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13450 Neighboring gene transmembrane protein 191B Neighboring gene uncharacterized LOC124905077 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:20403447-20404004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20416022-20416587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20422795-20423596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:20424400-20425201 Neighboring gene uncharacterized LOC124905163

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
    3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • phosphatidylinositol 4-kinase, catalytic, alpha polypeptide pseudogene 1
    • phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1

    Clone Names

    • FLJ39405

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003563.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC131538
      Related
      ENST00000618794.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      18533864..18548828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8N8J0.1 GenPept UniProtKB/Swiss-Prot:Q8N8J0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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