gpcp-2 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: gpcp-2
Official Full Name: Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2
Primary source: WormBase:WBGene00011511
Locus tag: CELE_T05H10.7
See related: AllianceGenome:WB:WBGene00011511
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See gpcp-2 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 8

Sequence:: Chromosome: II; NC_003280.10 (8067976..8073374, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

T05H10.7 (e-PCR)
- UniSTS:307938

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info
enables glycerophosphocholine phosphodiesterase activity	IBA Inferred from Biological aspect of Ancestor more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables phosphoric diester hydrolase activity	IEA Inferred from Electronic Annotation more info
enables starch binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in glycerophospholipid catabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in lipid metabolic process	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2

NP_001022321.1

Confirmed by transcript evidence

NP_001370176.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

8067976..8073374 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001027150.3 → NP_001022321.1 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001022321.1

Status: REVIEWED

UniProtKB/Swiss-Prot

G5ECZ6, Q10003

Conserved Domains (3) summary

cd05814
Location:84 → 207

CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...

cd08607
Location:402 → 704

GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

pfam03009
Location:406 → 706

GDPD; Glycerophosphoryl diester phosphodiesterase family
NM_001383901.2 → NP_001370176.1 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog 2 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (2) summary

cd05814
Location:7 → 130

CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...

cd08607
Location:325 → 627

GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins