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    Tmem269 transmembrane protein 269 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500537, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tmem269provided by RGD
    Official Full Name
    transmembrane protein 269provided by RGD
    Primary source
    RGD:1563015
    See related
    EnsemblRapid:ENSRNOG00000006658 AllianceGenome:RGD:1563015
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563015
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM269 (transmembrane protein 269). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 17.8) and Brain (RPKM 1.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem269 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138102637..138121078, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (132817324..132836360, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138254946..138272589, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene erythroblast membrane associated protein (Scianna blood group) Neighboring gene small vasohibin binding protein Neighboring gene similar to human chromosome 1 open reading frame 50 Neighboring gene prolyl 3-hydroxylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 269

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134627.2 → NP_001128099.2  transmembrane protein 269

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6JZL8, D3ZGY5
      Related
      ENSRNOP00000008725.7, ENSRNOT00000008726.9
      Conserved Domains (2) summary
      TIGR04217
      Location:36 → 242
      archae_ser_T; archaetidylserine synthase
      cl00453
      Location:49 → 197
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138102637..138121078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110605.2 → XP_038966533.1  transmembrane protein 269 isoform X2

      Conserved Domains (1) summary
      COG1183
      Location:20 → 214
      PssA; Phosphatidylserine synthase [Lipid transport and metabolism]

    2. XM_039110604.2 → XP_038966532.1  transmembrane protein 269 isoform X2

      Conserved Domains (1) summary
      COG1183
      Location:20 → 214
      PssA; Phosphatidylserine synthase [Lipid transport and metabolism]

    3. XM_008764056.4 → XP_008762278.1  transmembrane protein 269 isoform X1

      See identical proteins and their annotated locations for XP_008762278.1

      Related
      ENSRNOP00000104222.1, ENSRNOT00000155336.1
      Conserved Domains (2) summary
      TIGR04217
      Location:74 → 280
      archae_ser_T; archaetidylserine synthase
      cl00453
      Location:87 → 235
      CDP-OH_P_transf; CDP-alcohol phosphatidyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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