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    Zmynd12 zinc finger, MYND-type containing 12 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313552, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Zmynd12provided by RGD
    Official Full Name
    zinc finger, MYND-type containing 12provided by RGD
    Primary source
    RGD:1307175
    See related
    EnsemblRapid:ENSRNOG00000022199 AllianceGenome:RGD:1307175
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in sperm axoneme assembly. Predicted to be located in sperm flagellum. Orthologous to human ZMYND12 (zinc finger MYND-type containing 12). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 65.2), Lung (RPKM 12.7) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmynd12 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138312257..138345269)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (133026917..133059985)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138470165..138505928)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 30 Neighboring gene transfer RNA alanine (anticodon AGC) 98 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene ribosomal modification protein rimK-like family member A Neighboring gene forkhead box J3 Neighboring gene ribosomal protein S27a, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in sperm axoneme assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYND domain-containing protein 12
    Names
    zinc finger, MYND domain containing 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107970.1 → NP_001101440.1  zinc finger MYND domain-containing protein 12

      See identical proteins and their annotated locations for NP_001101440.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474008
      UniProtKB/TrEMBL
      A6JZP2
      Conserved Domains (2) summary
      sd00006
      Location:89 → 119
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:49 → 113
      TPR_12; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138312257..138345269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110005.2 → XP_038965933.1  zinc finger MYND domain-containing protein 12 isoform X8

      Conserved Domains (3) summary
      sd00006
      Location:88 → 116
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:92 → 156
      TPR_12; Tetratricopeptide repeat
      pfam01753
      Location:17 → 54
      zf-MYND; MYND finger

    2. XM_006238760.5 → XP_006238822.1  zinc finger MYND domain-containing protein 12 isoform X2

      UniProtKB/TrEMBL
      A0A096MJU8
      Related
      ENSRNOP00000080728.2, ENSRNOT00000076488.3
      Conserved Domains (3) summary
      sd00006
      Location:132 → 162
      TPR; TPR repeat [structural motif]
      pfam01753
      Location:17 → 54
      zf-MYND; MYND finger
      pfam13424
      Location:92 → 156
      TPR_12; Tetratricopeptide repeat

    3. XM_006238759.5 → XP_006238821.1  zinc finger MYND domain-containing protein 12 isoform X1

      Related
      ENSRNOP00000108889.1, ENSRNOT00000162704.1
      Conserved Domains (3) summary
      sd00006
      Location:132 → 162
      TPR; TPR repeat [structural motif]
      pfam01753
      Location:17 → 54
      zf-MYND; MYND finger
      pfam13424
      Location:92 → 156
      TPR_12; Tetratricopeptide repeat

    4. XM_017593392.3 → XP_017448881.1  zinc finger MYND domain-containing protein 12 isoform X3

      UniProtKB/TrEMBL
      D4A6S7
      Related
      ENSRNOP00000059509.2, ENSRNOT00000064073.4

    5. XM_006238761.5 → XP_006238823.1  zinc finger MYND domain-containing protein 12 isoform X4

      Conserved Domains (3) summary
      sd00006
      Location:88 → 116
      TPR; TPR repeat [structural motif]
      pfam01753
      Location:17 → 54
      zf-MYND; MYND finger
      pfam13424
      Location:92 → 156
      TPR_12; Tetratricopeptide repeat

    6. XM_063287742.1 → XP_063143812.1  zinc finger MYND domain-containing protein 12 isoform X6

    7. XM_063287741.1 → XP_063143811.1  zinc finger MYND domain-containing protein 12 isoform X5

    8. XM_039110004.2 → XP_038965932.1  zinc finger MYND domain-containing protein 12 isoform X7

      Conserved Domains (1) summary
      sd00006
      Location:14 → 44
      TPR; TPR repeat [structural motif]

    9. XM_063287743.1 → XP_063143813.1  zinc finger MYND domain-containing protein 12 isoform X9

    RNA

    1. XR_005504452.2 RNA Sequence

    2. XR_005504454.2 RNA Sequence

    3. XR_005504455.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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