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    4933400C23Rik RIKEN cDNA 4933400C23 gene [ Mus musculus (house mouse) ]

    Gene ID: 331003, updated on 17-Aug-2024

    Summary

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    Official Symbol
    4933400C23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4933400C23 geneprovided by MGI
    Primary source
    MGI:MGI:5439420
    See related
    Ensembl:ENSMUSG00000101734 AllianceGenome:MGI:5439420
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933400C23
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 4933400C23Rik in Genome Data Viewer
    Location:
    9; 9 E3.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (92600769..92677764)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (92718716..92795711)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24901 Neighboring gene STARR-seq mESC enhancer starr_24902 Neighboring gene predicted gene 2495 Neighboring gene predicted gene 29396 Neighboring gene STARR-seq mESC enhancer starr_24903 Neighboring gene STARR-seq mESC enhancer starr_24904 Neighboring gene STARR-seq mESC enhancer starr_24905 Neighboring gene STARR-seq mESC enhancer starr_24906 Neighboring gene STARR-seq mESC enhancer starr_24907 Neighboring gene STARR-seq mESC enhancer starr_24908 Neighboring gene STARR-seq mESC enhancer starr_24909 Neighboring gene STARR-seq mESC enhancer starr_24910 Neighboring gene STARR-seq mESC enhancer starr_24911 Neighboring gene STARR-seq mESC enhancer starr_24912 Neighboring gene RIKEN cDNA 1700034K08 gene Neighboring gene STARR-seq mESC enhancer starr_24913 Neighboring gene alpha- and gamma-adaptin binding protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040770.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK077069, AV278158
      Related
      ENSMUST00000188610.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      92600769..92677764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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