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    Rell1 RELT-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 100532, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rell1provided by MGI
    Official Full Name
    RELT-like 1provided by MGI
    Primary source
    MGI:MGI:2140767
    See related
    Ensembl:ENSMUSG00000047881 AllianceGenome:MGI:2140767
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in positive regulation of p38MAPK cascade. Predicted to be located in microtubule cytoskeleton. Predicted to be active in plasma membrane. Is expressed in retina. Orthologous to human RELL1 (RELT like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 8.9), adrenal adult (RPKM 7.4) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rell1 in Genome Data Viewer
    Location:
    5 C3.1; 5 32.8 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (64047296..64126165, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (63889337..63969020, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13178 Neighboring gene NACHT and WD repeat domain containing 2, opposite strand Neighboring gene NACHT and WD repeat domain containing 2 Neighboring gene hematological and neurological expressed 1 protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_13179 Neighboring gene RIKEN cDNA 0610040J01 gene Neighboring gene STARR-positive B cell enhancer ABC_E8053 Neighboring gene STARR-seq mESC enhancer starr_13182 Neighboring gene STARR-seq mESC enhancer starr_13187 Neighboring gene STARR-positive B cell enhancer ABC_E8054 Neighboring gene STARR-seq mESC enhancer starr_13191 Neighboring gene STARR-seq mESC enhancer starr_13192 Neighboring gene STARR-seq mESC enhancer starr_13193 Neighboring gene predicted gene, 25608 Neighboring gene RIKEN cDNA 5830416I19 gene Neighboring gene STARR-positive B cell enhancer mm9_chr5:64431930-64432231

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of p38MAPK cascade IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of p38MAPK cascade ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of p38MAPK cascade ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417949.1NP_001404878.1  RELT-like protein 1 isoform a precursor

      Status: VALIDATED

      Source sequence(s)
      AC158789
      UniProtKB/Swiss-Prot
      Q3TVW8, Q3UZH6, Q8K2J7, Q8R3S5
    2. NM_001417950.1NP_001404879.1  RELT-like protein 1 isoform a precursor

      Status: VALIDATED

      Source sequence(s)
      AC158789
      UniProtKB/Swiss-Prot
      Q3TVW8, Q3UZH6, Q8K2J7, Q8R3S5
    3. NM_001417951.1NP_001404880.1  RELT-like protein 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC158789
    4. NM_145923.5NP_666035.2  RELT-like protein 1 isoform a precursor

      See identical proteins and their annotated locations for NP_666035.2

      Status: VALIDATED

      Source sequence(s)
      AC158789
      Consensus CDS
      CCDS39093.1
      UniProtKB/Swiss-Prot
      Q3TVW8, Q3UZH6, Q8K2J7, Q8R3S5
      Related
      ENSMUSP00000118125.2, ENSMUST00000154169.4
      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      64047296..64126165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)