U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fbxw28 F-box and WD-40 domain protein 28 [ Mus musculus (house mouse) ]

    Gene ID: 668758, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fbxw28provided by MGI
    Official Full Name
    F-box and WD-40 domain protein 28provided by MGI
    Primary source
    MGI:MGI:3779847
    See related
    Ensembl:ENSMUSG00000054087 AllianceGenome:MGI:3779847
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm9337
    Summary
    Predicted to be active in cytoplasm. Orthologous to human FBXW12 (F-box and WD repeat domain containing 12). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward ovary adult (RPKM 1.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fbxw28 in Genome Data Viewer
    Location:
    9 F2; 9 59.64 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (109151862..109168727, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (109322794..109339659, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene F-box and WD-40 domain protein 14 Neighboring gene predicted gene, 22821 Neighboring gene predicted gene, 25484 Neighboring gene predicted gene, 24641

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box and WD-40 domain protein 28

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177419.1 → NP_001170890.1  F-box and WD-40 domain protein 28 isoform 1

      See identical proteins and their annotated locations for NP_001170890.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the shorter isoform (1).
      Source sequence(s)
      AC164438, AK143322
      Consensus CDS
      CCDS52932.1
      UniProtKB/TrEMBL
      B9EHJ2, Q3UPQ4
      Related
      ENSMUSP00000107671.3, ENSMUST00000112040.9
      Conserved Domains (1) summary
      pfam12937
      Location:4 → 48
      F-box-like; F-box-like

    2. NM_001177420.1 → NP_001170891.1  F-box and WD-40 domain protein 28 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate terminal exon and differs in the 3' coding region and 3' UTR compared to variant 1. The resulting protein (isoform 2) has a different, longer C-terminus compared to isoform 1.
      Source sequence(s)
      AC164438, BC084592
      Consensus CDS
      CCDS52933.1
      UniProtKB/TrEMBL
      B9EHJ2, E9Q8A4
      Related
      ENSMUSP00000107670.3, ENSMUST00000112039.7
      Conserved Domains (1) summary
      pfam12937
      Location:4 → 48
      F-box-like; F-box-like

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      109151862..109168727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512211.2 → XP_006512274.1  F-box and WD-40 domain protein 28 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JFZ2, B7ZN94
      Related
      ENSMUSP00000143361.2, ENSMUST00000200156.5
      Conserved Domains (1) summary
      pfam12937
      Location:4 → 46
      F-box-like
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools