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    Sprr2b small proline-rich protein 2B [ Mus musculus (house mouse) ]

    Gene ID: 20756, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sprr2bprovided by MGI
    Official Full Name
    small proline-rich protein 2Bprovided by MGI
    Primary source
    MGI:MGI:1330352
    See related
    Ensembl:ENSMUSG00000050092 AllianceGenome:MGI:1330352
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within response to estradiol. Predicted to be located in cytoplasm. Is expressed in bladder; gut; and skin. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in stomach adult (RPKM 25.1), small intestine adult (RPKM 6.0) and 4 other tissues See more
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    Genomic context

    See Sprr2b in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92224012..92225448)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92316705..92318085)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr3:92069949-92070249 Neighboring gene STARR-positive B cell enhancer mm9_chr3:92070431-92070732 Neighboring gene STARR-positive B cell enhancer mm9_chr3:92071949-92072250 Neighboring gene ribosomal protein L3 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr3:92074536-92074836 Neighboring gene STARR-positive B cell enhancer mm9_chr3:92080442-92080742 Neighboring gene small proline-rich protein 2A3 Neighboring gene STARR-seq mESC enhancer starr_08311 Neighboring gene small proline-rich protein 2C, pseudogene Neighboring gene small proline-rich protein 2D

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    General gene information

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in epidermis development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in keratinization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in keratinocyte differentiation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within response to estradiol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cornified envelope NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small proline-rich protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011469.4NP_035599.2  small proline-rich protein 2B

      See identical proteins and their annotated locations for NP_035599.2

      Status: VALIDATED

      Source sequence(s)
      AC129296
      Consensus CDS
      CCDS38509.1
      UniProtKB/Swiss-Prot
      O70554, Q7TSB2
      UniProtKB/TrEMBL
      A9JTY7
      Related
      ENSMUSP00000058131.3, ENSMUST00000061038.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92224012..92225448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)