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    Btbd35f1 BTB domain containing 35, family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 71847, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Btbd35f1provided by MGI
    Official Full Name
    BTB domain containing 35, family member 1provided by MGI
    Primary source
    MGI:MGI:1919097
    See related
    Ensembl:ENSMUSG00000118459 AllianceGenome:MGI:1919097
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gclh; Gmcl2; Gmcl1l; 1700017G21Rik
    Summary
    Predicted to be involved in germ cell development; protein ubiquitination; and spermatogenesis. Predicted to be located in nuclear matrix. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Btbd35f1 in Genome Data Viewer
    Location:
    X A3.1; X 19.56 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (32070822..32072776)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (32560055..32562009)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene spindlin family, member 2I Neighboring gene STARR-seq mESC enhancer starr_46958 Neighboring gene predicted gene, 17864 Neighboring gene STARR-seq mESC enhancer starr_46959 Neighboring gene STARR-seq mESC enhancer starr_46960 Neighboring gene STARR-seq mESC enhancer starr_46961 Neighboring gene predicted gene, 46671 Neighboring gene STARR-seq mESC enhancer starr_46962 Neighboring gene spindlin family, member 2H

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel protein interactions with endoglin and activin receptor-like kinase 1: potential role in vascular networks. Xu G, et al. Mol Cell Proteomics, 2014 Feb. PMID 24319055, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC107240, MGC141289

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in germ cell development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear matrix IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    germ cell-less protein-like 1-like
    Names
    germ cell-less homolog 1-like
    germ cell-less protein-like 2
    germ cell-less, spermatogenesis associated-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027955.3 → NP_082231.2  germ cell-less protein-like 1-like

      Status: VALIDATED

      Source sequence(s)
      CT954255
      Consensus CDS
      CCDS40910.1
      UniProtKB/TrEMBL
      A0A571BEF3, J3QNQ5
      Related
      ENSMUSP00000158585.2, ENSMUST00000238237.2
      Conserved Domains (2) summary
      cl38908
      Location:80 → 190
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      cl28903
      Location:191 → 268
      BACK; BACK (BTB and C-terminal Kelch) domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      32070822..32072776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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