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    AI847159 expressed sequence AI847159 [ Mus musculus (house mouse) ]

    Gene ID: 100048701, updated on 9-Dec-2024

    Summary

    Official Symbol
    AI847159provided by MGI
    Official Full Name
    expressed sequence AI847159provided by MGI
    Primary source
    MGI:MGI:3528181
    See related
    AllianceGenome:MGI:3528181
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in retina outer nuclear layer. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in thymus adult (RPKM 2.7), frontal lobe adult (RPKM 0.5) and 5 other tissues See more
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    Genomic context

    See AI847159 in Genome Data Viewer
    Location:
    2 F1; 2 62.75 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (129020068..129022593, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (129178148..129180673, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene SET domain containing 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_05661 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:129005758-129006030 Neighboring gene predicted gene, 39932 Neighboring gene STARR-positive B cell enhancer ABC_E3404 Neighboring gene solute carrier family 20, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045264.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL772347, BE986579, CK617975

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      129020068..129022593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)