U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5071 predicted gene 5071 [ Mus musculus (house mouse) ]

    Gene ID: 278087, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm5071provided by MGI
    Official Full Name
    predicted gene 5071provided by MGI
    Primary source
    MGI:MGI:3645128
    See related
    Ensembl:ENSMUSG00000078123 AllianceGenome:MGI:3645128
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG278087; Mageb17-ps2
    Summary
    Orthologous to human MAGEB17 (MAGE family member B17). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 3.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gm5071 in Genome Data Viewer
    Location:
    X C2; X 40.56 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (90975116..90977971, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (91931510..91934365, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene melanoma antigen, family B pseudogene Neighboring gene cytidine 5'-triphosphate synthase pseudogene Neighboring gene STARR-seq mESC enhancer starr_47538 Neighboring gene PR domain containing 4 pseudogene Neighboring gene MAGE family member B1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    melanoma antigen, family B-like
    Names
    melanoma antigen, family B, 2
    predicted pseudogene 5071

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256004.1 → NP_001242933.1  melanoma antigen, family B-like

      See identical proteins and their annotated locations for NP_001242933.1

      Status: INFERRED

      Source sequence(s)
      AL627385
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      90975116..90977971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528069.2 → XP_006528132.1  melanoma antigen, family B-like isoform X1

      See identical proteins and their annotated locations for XP_006528132.1

      Related
      ENSMUSP00000160104.1, ENSMUST00000104922.3
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    2. XM_006528070.2 → XP_006528133.1  melanoma antigen, family B-like isoform X1

      See identical proteins and their annotated locations for XP_006528133.1

      Related
      ENSMUSP00000160103.1, ENSMUST00000381698.1
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001083629.1: Suppressed sequence

      Description
      NM_001083629.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.