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    Gm3500 predicted gene 3500 [ Mus musculus (house mouse) ]

    Gene ID: 100041678, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm3500provided by MGI
    Official Full Name
    predicted gene 3500provided by MGI
    Primary source
    MGI:MGI:3781677
    See related
    Ensembl:ENSMUSG00000096003 AllianceGenome:MGI:3781677
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm3401; 100041758
    Expression
    Biased expression in CNS E18 (RPKM 3.1), whole brain E14.5 (RPKM 1.9) and 12 other tissues See more
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    Genomic context

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    See Gm3500 in Genome Data Viewer
    Location:
    14 A2; 14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (17080554..17103981)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (5365792..5389718, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3194 Neighboring gene predicted gene, 41087 Neighboring gene predicted gene, 53829 Neighboring gene predicted gene 3348 Neighboring gene predicted gene 3542 Neighboring gene predicted gene 3339

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    predicted gene 3468
    Names
    alpha11-takusan
    alpha12-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256886.1 → NP_001243815.1  predicted gene 3468

      See identical proteins and their annotated locations for NP_001243815.1

      Status: VALIDATED

      Source sequence(s)
      AC125198
      Consensus CDS
      CCDS56924.1
      UniProtKB/TrEMBL
      A6NAS6, A6NAS7
      Related
      ENSMUSP00000137355.2, ENSMUST00000177986.8
      Conserved Domains (1) summary
      pfam04822
      Location:50 → 125
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      17080554..17103981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158315.1 → XP_036014208.1  predicted gene 3468 isoform X1

    2. XM_036158317.1 → XP_036014210.1  predicted gene 3468 isoform X1

    3. XM_036158316.1 → XP_036014209.1  predicted gene 3468 isoform X1

    4. XM_036158313.1 → XP_036014206.1  predicted gene 3468 isoform X1

    5. XM_036158314.1 → XP_036014207.1  predicted gene 3468 isoform X1

    6. XM_036158312.1 → XP_036014205.1  predicted gene 3468 isoform X1

    RNA

    1. XR_004938347.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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