Hoxaas3 Hoxa cluster antisense RNA 3 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Hoxaas3provided by MGI
Official Full Name: Hoxa cluster antisense RNA 3provided by MGI
Primary source: MGI:MGI:1919878
See related: Ensembl:ENSMUSG00000085696 AllianceGenome:MGI:1919878
Gene type: ncRNA
RefSeq status: PREDICTED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 2700086A05Rik
Summary: Orthologous to human HOXA-AS3 (HOXA cluster antisense RNA 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in colon adult (RPKM 7.0), ovary adult (RPKM 6.1) and 10 other tissues See more
Orthologs: all
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Genomic context

Location:: 6 B3; 6 25.4 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	6	NC_000072.7 (52178104..52190577)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	6	NC_000072.6 (52201124..52213597)

Chromosome 6 - NC_000072.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

Hoxa5 (e-PCR), detects polymorphism
- UniSTS:143368

Hoxa5 (e-PCR), detects polymorphism
- UniSTS:143369

Hoxa6 (e-PCR), detects polymorphism
- UniSTS:143370

MARC_6217-6218:992007117:1 (e-PCR)
- UniSTS:231213

UniSTS:57649 (e-PCR)
- UniSTS:57649

UniSTS:467537 (e-PCR)
- UniSTS:467537

Hoxa6 (e-PCR), detects polymorphism
- UniSTS:467537

REN100507 (e-PCR)
- UniSTS:425304

Hoxa5 (e-PCR), detects polymorphism
- UniSTS:239193

REN100511 (e-PCR)
- UniSTS:425308

REN100512 (e-PCR)
- UniSTS:425309

REN100522 (e-PCR)
- UniSTS:425319

REN100523 (e-PCR)
- UniSTS:425320

REN100524 (e-PCR)
- UniSTS:425321

stSG609349 (e-PCR)
- UniSTS:449442

Y00208 (e-PCR)
- UniSTS:125907

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.