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    CK137956 cDNA sequence CK137956 [ Mus musculus (house mouse) ]

    Gene ID: 635169, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CK137956provided by MGI
    Official Full Name
    cDNA sequence CK137956provided by MGI
    Primary source
    MGI:MGI:3616080
    See related
    Ensembl:ENSMUSG00000028813 AllianceGenome:MGI:3616080
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C1orf94 (chromosome 1 open reading frame 94). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 60.7) See more
    Orthologs
    human all
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    Genomic context

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    See CK137956 in Genome Data Viewer
    Location:
    4 D2.2; 4 61.65 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (127821385..127882072, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127927592..127988302, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40255 Neighboring gene STARR-seq mESC enhancer starr_11449 Neighboring gene predicted gene, 40256 Neighboring gene predicted gene, 38571 Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene STARR-seq mESC enhancer starr_11450 Neighboring gene STARR-seq mESC enhancer starr_11451 Neighboring gene STARR-seq mESC enhancer starr_11452 Neighboring gene high-mobility group box 4, opposite strand Neighboring gene high-mobility group box 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Regulation of Miwi-mediated mRNA stabilization by Ck137956/Tssa is essential for male fertility. Chen Y, et al. BMC Biol, 2023 Apr 17. PMID 37069605, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Regulation of Miwi-mediated mRNA stabilization by Ck137956/Tssa is essential for male fertility.
      Title: Regulation of Miwi-mediated mRNA stabilization by Ck137956/Tssa is essential for male fertility.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C1orf94 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134733.2 → NP_001128205.1  uncharacterized protein C1orf94 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL928698
      Consensus CDS
      CCDS51304.1
      UniProtKB/TrEMBL
      B1AYM9
      Related
      ENSMUSP00000030614.3, ENSMUST00000030614.3
      Conserved Domains (1) summary
      pfam15752
      Location:197 → 596
      DUF4688; Domain of unknown function (DUF4688)

    2. NM_001425125.1 → NP_001412054.1  uncharacterized protein C1orf94 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL928698
      UniProtKB/TrEMBL
      B2RW37

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      127821385..127882072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036164289.1 → XP_036020182.1  uncharacterized protein C1orf94 homolog isoform X1

      Conserved Domains (1) summary
      pfam15752
      Location:197 → 482
      DUF4688; Domain of unknown function (DUF4688)
    Nucleotide Protein Strain
    Heading Accession and Version

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