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    Cabp7 calcium binding protein 7 [ Mus musculus (house mouse) ]

    Gene ID: 192650, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cabp7provided by MGI
    Official Full Name
    calcium binding protein 7provided by MGI
    Primary source
    MGI:MGI:2183437
    See related
    Ensembl:ENSMUSG00000009075 AllianceGenome:MGI:2183437
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable calcium ion binding activity. Located in trans-Golgi network membrane. Is expressed in spinal cord and ventral grey horn. Orthologous to human CABP7 (calcium binding protein 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 31.2), cortex adult (RPKM 10.4) and 3 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cabp7 in Genome Data Viewer
    Location:
    11 A1; 11 2.98 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (4686892..4697179, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (4736892..4747179, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3930 Neighboring gene activating signal cointegrator 1 complex subunit 2 Neighboring gene STARR-seq mESC enhancer starr_28397 Neighboring gene STARR-seq mESC enhancer starr_28398 Neighboring gene STARR-positive B cell enhancer ABC_E2979 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene zinc finger, matrin type 5 Neighboring gene STARR-seq mESC enhancer starr_28401 Neighboring gene predicted gene, 35102 Neighboring gene neurofibromin 2 Neighboring gene STARR-seq mESC enhancer starr_28406 Neighboring gene STARR-seq mESC enhancer starr_28409 Neighboring gene STARR-seq mESC enhancer starr_28411 Neighboring gene STARR-seq mESC enhancer starr_28412 Neighboring gene peptidase M20 domain containing 2 pseudogene

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC129428, MGC129429

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in trans-Golgi network membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in trans-Golgi network membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    calcium-binding protein 7
    Names
    calcium-binding protein CaBP7
    calneuron-2
    calneuron-II

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138948.4NP_620398.1  calcium-binding protein 7

      See identical proteins and their annotated locations for NP_620398.1

      Status: VALIDATED

      Source sequence(s)
      AL606521
      Consensus CDS
      CCDS24390.1
      UniProtKB/Swiss-Prot
      Q91ZM8
      UniProtKB/TrEMBL
      Q5NCJ7
      Related
      ENSMUSP00000009219.3, ENSMUST00000009219.3
      Conserved Domains (1) summary
      PTZ00184
      Location:27102
      PTZ00184; calmodulin; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      4686892..4697179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)