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    SDHAP4 SDHA pseudogene 4 [ Homo sapiens (human) ]

    Gene ID: 220729, updated on 10-Dec-2024

    Summary

    Official Symbol
    SDHAP4provided by HGNC
    Official Full Name
    SDHA pseudogene 4provided by HGNC
    Primary source
    HGNC:HGNC:55782
    See related
    Ensembl:ENSG00000291091 AllianceGenome:HGNC:55782
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in endometrium (RPKM 10.2), duodenum (RPKM 10.1) and 25 other tissues See more
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    Genomic context

    See SDHAP4 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (197614027..197627881, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200346591..200360444, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (197340898..197354752, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197238623-197239160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197247683-197248388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197248389-197249094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197250741-197251240 Neighboring gene 3-hydroxybutyrate dehydrogenase 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:197268447-197269042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197269043-197269636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21111 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:197303211-197303712 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197306909-197307455 Neighboring gene ribosomal protein L36 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15088 Neighboring gene uncharacterized LOC124909481 Neighboring gene keratinocyte proline-rich protein Neighboring gene PPP4R2 pseudogene 4 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:197380592-197381265 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15089 Neighboring gene MPRA-validated peak4995 silencer Neighboring gene uncharacterized LOC124906331 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197390351-197390864 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197392407-197392920

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    Other Names

    • succinate dehydrogenase complex flavoprotein subunit A pseudogene
    • succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene

    Clone Names

    • FLJ18755

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003266.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC080518
      Related
      ENST00000685536.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      197614027..197627881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200346591..200360444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)