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    FRG1JP FSHD region gene 1 family member J, pseudogene [ Homo sapiens (human) ]

    Gene ID: 642236, updated on 22-Oct-2024

    Summary

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    Official Symbol
    FRG1JPprovided by HGNC
    Official Full Name
    FSHD region gene 1 family member J, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:51768
    See related
    Ensembl:ENSG00000307942 AllianceGenome:HGNC:51768
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in prostate (RPKM 2.2), spleen (RPKM 2.0) and 25 other tissues See more
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    Genomic context

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    See FRG1JP in Genome Data Viewer
    Location:
    9q13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (63832050..63859634, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (47695033..47722619)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (68427784..68455368, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:68413366-68413904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:68413905-68414441 Neighboring gene long intergenic non-protein coding RNA 537 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68420179-68420680 Neighboring gene Sharpr-MPRA regulatory region 9804 Neighboring gene Sharpr-MPRA regulatory region 11770 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:68424461-68425069 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:68425679-68426286 Neighboring gene microRNA 4477b Neighboring gene double homeobox 4 like 50 (pseudogene) Neighboring gene MPRA-validated peak7254 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68468609-68469276 Neighboring gene Zn regulated GTPase metalloprotein activator 1C pseudogene Neighboring gene asparagine synthetase pseudogene Neighboring gene MT-CO3 pseudogene 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • FSHD region gene 1 pseudogene
    • NB - could be FRG1IP depending on decision re FRG1H/P

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033907.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BG282219, BM979847, BU619828, CR786580, DA268615, DB141416
      Related
      ENST00000829956.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      63832050..63859634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      47695033..47722619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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