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    Gm5409 predicted pseudogene 5409 [ Mus musculus (house mouse) ]

    Gene ID: 386551, updated on 8-Sep-2024

    Summary

    Official Symbol
    Gm5409provided by MGI
    Official Full Name
    predicted pseudogene 5409provided by MGI
    Primary source
    MGI:MGI:3643903
    See related
    Ensembl:ENSMUSG00000059014 AllianceGenome:MGI:3643903
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Try10l; EG386551
    Expression
    Biased expression in small intestine adult (RPKM 72.2), spleen adult (RPKM 33.6) and 2 other tissues See more
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    Genomic context

    See Gm5409 in Genome Data Viewer
    Location:
    6 B1; 6 19.55 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (41393841..41396571)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (41416907..41419637)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene T cell receptor beta chain Neighboring gene STARR-seq mESC enhancer starr_15698 Neighboring gene serine protease 3 Neighboring gene serine protease 1 (trypsin 1) like Neighboring gene STARR-seq mESC enhancer starr_15699 Neighboring gene serine protease 3 like Neighboring gene serine protease 1 (trypsin 1) Neighboring gene proline-rich polypeptide 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_006980.1 

      Range
      526113..528843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      41393841..41396571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001003664.2: Suppressed sequence

      Description
      NM_001003664.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.