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    Snord123 small nucleolar RNA, C/D box 123 [ Mus musculus (house mouse) ]

    Gene ID: 66835, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Snord123provided by MGI
    Official Full Name
    small nucleolar RNA, C/D box 123provided by MGI
    Primary source
    MGI:MGI:5297223
    See related
    Ensembl:ENSMUSG00000089317 AllianceGenome:MGI:5297223
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human SNORD123 (small nucleolar RNA, C/D box 123). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Snord123 in Genome Data Viewer
    Location:
    15 B3.1; 15 13.02 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (32241991..32242078, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (32241845..32241932, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 75 pseudogene Neighboring gene STARR-seq mESC enhancer starr_38295 Neighboring gene STARR-seq mESC enhancer starr_38296 Neighboring gene predicted gene, 32499 Neighboring gene taste receptor, type 2, member 119 Neighboring gene STARR-seq mESC enhancer starr_38297 Neighboring gene small nucleolar RNA host gene 18 Neighboring gene STARR-seq mESC enhancer starr_38298 Neighboring gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Neighboring gene predicted gene, 53870 Neighboring gene predicted gene, 41289

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028575.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC137123
      Related
      ENSMUST00000158692.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      32241991..32242078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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