U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nhlrc4 NHL repeat containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 621239, updated on 9-Dec-2024

    Summary

    Official Symbol
    Nhlrc4provided by MGI
    Official Full Name
    NHL repeat containing 4provided by MGI
    Primary source
    MGI:MGI:3687200
    See related
    Ensembl:ENSMUSG00000090113 AllianceGenome:MGI:3687200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    F430201B04Rik
    Summary
    Orthologous to human NHLRC4 (NHL repeat containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in liver E14.5 (RPKM 3.2), ovary adult (RPKM 2.8) and 8 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Nhlrc4 in Genome Data Viewer
    Location:
    17 A3.3; 17 13.03 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (26161207..26163905, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (25942233..25944931, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene WAP, FS, Ig, KU, and NTR-containing protein 1 Neighboring gene Rab40C, member RAS oncogene family Neighboring gene cytochrome c oxidase subunit 7C, pseudogene 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:26056925-26057108 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene RIKEN cDNA gene D630044L22 gene Neighboring gene proline rich 35 Neighboring gene calpain 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    NHL-repeat-containing protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039038.3NP_001034127.2  NHL-repeat-containing protein 4

      Status: VALIDATED

      Source sequence(s)
      AC159277
      Consensus CDS
      CCDS28539.1
      Related
      ENSMUSP00000082102.4, ENSMUST00000085027.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      26161207..26163905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)