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    Fsip2l fibrous sheath-interacting protein 2-like [ Mus musculus (house mouse) ]

    Gene ID: 209005, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fsip2lprovided by MGI
    Official Full Name
    fibrous sheath-interacting protein 2-likeprovided by MGI
    Primary source
    MGI:MGI:2685441
    See related
    Ensembl:ENSMUSG00000079606 AllianceGenome:MGI:2685441
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm595
    Expression
    Restricted expression toward testis adult (RPKM 2.7) See more
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    Genomic context

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    See Fsip2l in Genome Data Viewer
    Location:
    X A5; X 25.74 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (47930335..47966692, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (48841458..48877815, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47124 Neighboring gene STARR-seq mESC enhancer starr_47125 Neighboring gene RNA binding motif protein, X-linked 2 Neighboring gene hyaluronic acid binding protein 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47126 Neighboring gene STARR-seq mESC enhancer starr_47127 Neighboring gene STARR-seq mESC enhancer starr_47128 Neighboring gene predicted gene, 35107 Neighboring gene ecto-NOX disulfide-thiol exchanger 2 Neighboring gene predicted gene, 35210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC209005

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085499.1 → NP_001078968.1  uncharacterized protein LOC209005

      Status: PREDICTED

      Source sequence(s)
      AK133392, BX572082
      Consensus CDS
      CCDS40962.1
      UniProtKB/TrEMBL
      A2AF73
      Related
      ENSMUSP00000110578.2, ENSMUST00000114928.2
      Conserved Domains (1) summary
      PTZ00108
      Location:110 → 431
      PTZ00108; DNA topoisomerase 2-like protein; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      47930335..47966692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541466.2 → XP_006541529.1  uncharacterized protein LOC209005 isoform X1

      Conserved Domains (1) summary
      PTZ00108
      Location:110 → 431
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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