U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Prr30 proline rich 30 [ Mus musculus (house mouse) ]

    Gene ID: 76627, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Prr30provided by MGI
    Official Full Name
    proline rich 30provided by MGI
    Primary source
    MGI:MGI:1923877
    See related
    Ensembl:ENSMUSG00000042888 AllianceGenome:MGI:1923877
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700110M21Rik
    Summary
    Orthologous to human PRR30 (proline rich 30). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 311.5) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Prr30 in Genome Data Viewer
    Location:
    14 E2.3; 14 50.9 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (101435126..101437840, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (101197690..101200404, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_37469 Neighboring gene predicted gene, 23538 Neighboring gene STARR-seq mESC enhancer starr_37471 Neighboring gene predicted gene, 46481 Neighboring gene STARR-seq mESC enhancer starr_37472 Neighboring gene STARR-seq mESC enhancer starr_37473 Neighboring gene predicted gene, 34361 Neighboring gene STARR-seq mESC enhancer starr_37474 Neighboring gene heat shock protein 1 (chaperonin), pseudogene 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    proline-rich protein 30

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029680.1 → NP_083956.1  proline-rich protein 30

      See identical proteins and their annotated locations for NP_083956.1

      Status: VALIDATED

      Source sequence(s)
      AK007164, BX521393, CT010516
      Consensus CDS
      CCDS36999.1
      UniProtKB/Swiss-Prot
      E9QQ59, Q9D9B7
      Related
      ENSMUSP00000060206.5, ENSMUST00000057718.11
      Conserved Domains (1) summary
      pfam15728
      Location:1 → 400
      DUF4679; Domain of unknown function (DUF4679)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      101435126..101437840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519675.1 → XP_006519738.1  proline-rich protein 30 isoform X1

      See identical proteins and their annotated locations for XP_006519738.1

      UniProtKB/Swiss-Prot
      E9QQ59, Q9D9B7
      Related
      ENSMUSP00000139590.2, ENSMUST00000187304.2
      Conserved Domains (1) summary
      pfam15728
      Location:1 → 400
      DUF4679; Domain of unknown function (DUF4679)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D9B7.2 GenPept UniProtKB/Swiss-Prot:Q9D9B7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools