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    Zfp84 zinc finger protein 84 [ Mus musculus (house mouse) ]

    Gene ID: 74352, updated on 9-Dec-2024

    Summary

    Official Symbol
    Zfp84provided by MGI
    Official Full Name
    zinc finger protein 84provided by MGI
    Primary source
    MGI:MGI:107780
    See related
    Ensembl:ENSMUSG00000046185 AllianceGenome:MGI:107780
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp69; KRAB18; 2210410P13Rik; 4633401C23Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system; early conceptus; genitourinary system; and limb mesenchyme. Orthologous to human ZNF565 (zinc finger protein 565). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 4.7), CNS E14 (RPKM 4.6) and 27 other tissues See more
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    Genomic context

    See Zfp84 in Genome Data Viewer
    Location:
    7 B1; 7 17.25 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (29467977..29480844)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (29768552..29781419)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23103 Neighboring gene STARR-seq mESC enhancer starr_18485 Neighboring gene predicted gene, 38983 Neighboring gene STARR-positive B cell enhancer ABC_E6530 Neighboring gene microRNA 1964 Neighboring gene STARR-seq mESC enhancer starr_18488 Neighboring gene zinc finger protein 30 Neighboring gene predicted gene 6579

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus  

    General protein information

    Preferred Names
    zinc finger protein 84
    Names
    zinc finger protein 69

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023750.2NP_076239.1  zinc finger protein 84

      See identical proteins and their annotated locations for NP_076239.1

      Status: VALIDATED

      Source sequence(s)
      AC122256, AK034259, AK145426
      Consensus CDS
      CCDS21074.1
      UniProtKB/TrEMBL
      Q9D654
      Related
      ENSMUSP00000032802.5, ENSMUST00000032802.5
      Conserved Domains (5) summary
      smart00349
      Location:1474
      KRAB; krueppel associated box
      COG5048
      Location:243559
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:447467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:1453
      KRAB; KRAB box
      pfam13465
      Location:515540
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      29467977..29480844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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