U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slc17a2 solute carrier family 17, member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306950, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Slc17a2provided by RGD
    Official Full Name
    solute carrier family 17, member 2provided by RGD
    Primary source
    RGD:1308821
    See related
    EnsemblRapid:ENSRNOG00000017180 AllianceGenome:RGD:1308821
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable urate transmembrane transporter activity. Predicted to be involved in monoatomic anion transport. Predicted to be active in apical plasma membrane. Orthologous to human SLC17A2 (solute carrier family 17 member 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Liver (RPKM 311.5), Kidney (RPKM 89.2) and 1 other tissue See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Slc17a2 in Genome Data Viewer
    Location:
    17p11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (41748195..41767601, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (41318312..41339012, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (43567528..43584228, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 1 Neighboring gene uncharacterized LOC134482855 Neighboring gene solute carrier family 17 member 3 Neighboring gene H1.1 linker histone, cluster member Neighboring gene tripartite motif containing 38 Neighboring gene histone H4C like 1 Neighboring gene H3 clustered histone 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables urate transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in urate transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in apical plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sodium-dependent phosphate transport protein 3
    Names
    solute carrier family 17 (sodium phosphate), member 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107353.2 → NP_001100823.1  sodium-dependent phosphate transport protein 3

      See identical proteins and their annotated locations for NP_001100823.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      A6KLL4, A6KLL5, D4A3I8
      Related
      ENSRNOP00000023241.6, ENSRNOT00000023241.8
      Conserved Domains (2) summary
      cd06174
      Location:81 → 436
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00894
      Location:1 → 434
      2A0114euk; Na(+)-dependent inorganic phosphate cotransporter

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      41748195..41767601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039095709.2 → XP_038951637.1  sodium-dependent phosphate transport protein 3 isoform X5

      Conserved Domains (1) summary
      cd17318
      Location:5 → 390
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    2. XM_006253967.5 → XP_006254029.1  sodium-dependent phosphate transport protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006254029.1

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:21 → 462
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    3. XM_039095707.2 → XP_038951635.1  sodium-dependent phosphate transport protein 3 isoform X5

      Conserved Domains (1) summary
      cd17318
      Location:5 → 390
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    4. XM_006253966.5 → XP_006254028.1  sodium-dependent phosphate transport protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006254028.1

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:21 → 462
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    5. XM_039095704.2 → XP_038951632.1  sodium-dependent phosphate transport protein 3 isoform X2

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:21 → 462
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    6. XM_039095706.2 → XP_038951634.1  sodium-dependent phosphate transport protein 3 isoform X4

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:1 → 439
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    7. XM_039095702.2 → XP_038951630.1  sodium-dependent phosphate transport protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:30 → 471
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    8. XM_039095705.2 → XP_038951633.1  sodium-dependent phosphate transport protein 3 isoform X3

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:30 → 443
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    9. XM_039095703.2 → XP_038951631.1  sodium-dependent phosphate transport protein 3 isoform X1

      UniProtKB/TrEMBL
      A6KLL4
      Conserved Domains (1) summary
      cd17318
      Location:30 → 471
      MFS_SLC17; Solute carrier 17 (SLC17) family of the Major Facilitator Superfamily of transporters

    10. XM_039095712.2 → XP_038951640.1  sodium-dependent phosphate transport protein 3 isoform X7

      Conserved Domains (1) summary
      cl28910
      Location:30 → 240
      MFS; Major Facilitator Superfamily

    11. XM_039095710.2 → XP_038951638.1  sodium-dependent phosphate transport protein 3 isoform X6

      Conserved Domains (1) summary
      cl28910
      Location:30 → 325
      MFS; Major Facilitator Superfamily

    12. XM_039095711.2 → XP_038951639.1  sodium-dependent phosphate transport protein 3 isoform X7

      Conserved Domains (1) summary
      cl28910
      Location:30 → 240
      MFS; Major Facilitator Superfamily

    RNA

    1. XR_010058868.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools