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    MIF4G domain-containing protein / MA3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844433, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MIF4G domain-containing protein / MA3 domain-containing protein
    Primary source
    TAIR:AT1G80930
    Locus tag
    AT1G80930
    See related
    Araport:AT1G80930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.29; F23A5_29
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (30405339..30409768, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GAG1At protein Neighboring gene magnesium transporter 1 Neighboring gene vacuolar fusion CCZ1-like protein (DUF1712) Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Snf1 kinase interactor-like protein Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene F-box and Leucine Rich Repeat domains containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5. Deng X, et al. Proc Natl Acad Sci U S A, 2016 May 10. PMID 27114555, Free PMC Article
    2. Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions. Bi Y, et al. Nat Commun, 2021 Feb 11. PMID 33574257, Free PMC Article
    3. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106741.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    MIF4G domain-containing protein / MA3 domain-containing protein
    NP_178208.1
    • MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30405339..30409768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106741.3 → NP_178208.1  MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178208.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WW72, A0A654ESB4, Q9SAG7
      Conserved Domains (3) summary
      smart00543
      Location:364 → 546
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      PRK12678
      Location:33 → 283
      PRK12678; transcription termination factor Rho; Provisional
      pfam02847
      Location:650 → 756
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version

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