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    CILP cartilage intermediate layer protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709042, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CILPprovided by VGNC
    Official Full Name
    cartilage intermediate layer proteinprovided by VGNC
    Primary source
    VGNC:VGNC:71224
    Locus tag
    EGK_17596
    See related
    Ensembl:ENSMMUG00000009659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CILP in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (41734941..41752036, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (41862061..41878679, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X Neighboring gene uncharacterized LOC106999218 Neighboring gene U6 spliceosomal RNA Neighboring gene poly(ADP-ribose) polymerase family member 16 Neighboring gene small nucleolar RNA SNORA24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cartilage intermediate layer protein 1
    Names
    cartilage intermediate layer protein 1 preproprotein
    cartilage intermediate layer protein, nucleotide pyrophosphohydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      41734941..41752036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142477.2 → XP_014997963.1  cartilage intermediate layer protein 1

      UniProtKB/TrEMBL
      A0A8J8XKM4, F6YJ87, G7MXU4, I2CUV8
      Related
      ENSMMUP00000012630.2, ENSMMUT00000013481.4
      Conserved Domains (5) summary
      smart00209
      Location:152 → 200
      TSP1; Thrombospondin type 1 repeats
      smart00410
      Location:315 → 394
      IG_like; Immunoglobulin like
      pfam13330
      Location:56 → 139
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:226 → 288
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      cd00096
      Location:326 → 330
      Ig; Ig strand B [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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