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    GATA3 GATA binding protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713840, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GATA3provided by VGNC
    Official Full Name
    GATA binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:72889
    Locus tag
    EGK_19445
    See related
    Ensembl:ENSMMUG00000006944
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GATA3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (9145130..9174939)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (8013351..8033683)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC114670100 Neighboring gene uncharacterized LOC114669882 Neighboring gene uncharacterized LOC114670101 Neighboring gene pre-mRNA-splicing factor 38A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of epithelial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trans-acting T-cell-specific transcription factor GATA-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      9145130..9174939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028825952.1 → XP_028681785.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R753, A0A8J8YEY1, F7E1F3, G7N1K1, H9Z7L5
      Conserved Domains (2) summary
      PHA03377
      Location:1 → 261
      PHA03377; EBNA-3C; Provisional
      cd00202
      Location:317 → 367
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    2. XM_028825953.1 → XP_028681786.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

      UniProtKB/TrEMBL
      A0A5S6R753, A0A8J8YEY1, F7E1F3, G7N1K1, H9Z7L5
      Conserved Domains (2) summary
      PHA03377
      Location:1 → 261
      PHA03377; EBNA-3C; Provisional
      cd00202
      Location:317 → 367
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    3. XM_001108337.4 → XP_001108337.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

      See identical proteins and their annotated locations for XP_001108337.1

      UniProtKB/TrEMBL
      A0A5S6R753, A0A8J8YEY1, F7E1F3, G7N1K1, H9Z7L5
      Related
      ENSMMUP00000009115.4, ENSMMUT00000009704.4
      Conserved Domains (2) summary
      PHA03377
      Location:1 → 261
      PHA03377; EBNA-3C; Provisional
      cd00202
      Location:317 → 367
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    4. XM_015146429.2 → XP_015001915.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

      UniProtKB/TrEMBL
      H9Z7L5
      Conserved Domains (2) summary
      smart00401
      Location:312 → 361
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd00202
      Location:316 → 366
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    Nucleotide Protein
    Heading Accession and Version

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