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    COL1A2 collagen type I alpha 2 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700359, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL1A2provided by VGNC
    Official Full Name
    collagen type I alpha 2 chainprovided by VGNC
    Primary source
    VGNC:VGNC:81292
    See related
    Ensembl:ENSMMUG00000039654
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL1A2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    53
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (111694892..111731587, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (119752170..119788876)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene sarcoglycan epsilon Neighboring gene CAS1 domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114676983 Neighboring gene uncharacterized LOC114676984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen type I trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-2(I) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266337.1 → NP_001253266.1  collagen alpha-2(I) chain precursor

      See identical proteins and their annotated locations for NP_001253266.1

      Status: PROVISIONAL

      Source sequence(s)
      JU473293
      UniProtKB/TrEMBL
      H9Z2D1
      Conserved Domains (2) summary
      pfam01391
      Location:115 → 174
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1134 → 1365
      COLFI; Fibrillar collagen C-terminal domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      111694892..111731587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844858.1 → XP_028700691.1  collagen alpha-2(I) chain isoform X1

      UniProtKB/TrEMBL
      A0A1D5R5K5, A0A1D5RKA5
      Related
      ENSMMUP00000060749.2, ENSMMUT00000066812.2
      Conserved Domains (3) summary
      pfam01391
      Location:23 → 82
      Collagen; Collagen triple helix repeat (20 copies)
      PRK07764
      Location:421 → 597
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam01410
      Location:1042 → 1273
      COLFI; Fibrillar collagen C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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