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    LOC709576 ATP-dependent RNA helicase DDX19B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709576, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC709576
    Gene description
    ATP-dependent RNA helicase DDX19B
    Locus tag
    EGK_12989
    See related
    Ensembl:ENSMMUG00000020316
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    DDX19A; DDX19B
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    Genomic context

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    See LOC709576 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (61181934..61225360, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (54478887..54524125)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2 Neighboring gene DEAD-box helicase 19A Neighboring gene uncharacterized LOC114674301 Neighboring gene uncharacterized LOC114674300 Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene exosome component 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX19B
    Names
    ATP-dependent RNA helicase DDX19A
    DEAD (Asp-Glu-Ala-As) box polypeptide 19
    DEAD (Asp-Glu-Ala-As) box polypeptide 19B
    DEAD-box helicase 19B
    XP_001107762.1
    XP_001107827.1
    XP_001107893.1
    XP_014982002.1
    XP_028696539.1
    XP_028696540.1
    XP_028696541.1
    XP_028696542.1
    XP_028696543.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      61181934..61225360 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001107762.4 → XP_001107762.1  ATP-dependent RNA helicase DDX19B isoform X2

      UniProtKB/TrEMBL
      A0A5K1VSU2
      Conserved Domains (1) summary
      COG0513
      Location:95 → 483
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]

    2. XM_001107893.4 → XP_001107893.1  ATP-dependent RNA helicase DDX19B isoform X3

      See identical proteins and their annotated locations for XP_001107893.1

      UniProtKB/TrEMBL
      A0A5K1VSU2, A0A8J8XZB1, F6WP43, G7NR09, H9FWQ3
      Conserved Domains (2) summary
      cd18787
      Location:307 → 443
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:75 → 303
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_001107827.4 → XP_001107827.1  ATP-dependent RNA helicase DDX19B isoform X5

      UniProtKB/TrEMBL
      H9ERT8
      Conserved Domains (2) summary
      cd18787
      Location:268 → 404
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:36 → 264
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    4. XM_028840707.1 → XP_028696540.1  ATP-dependent RNA helicase DDX19B isoform X4

      UniProtKB/TrEMBL
      A0A5K1VSU2
      Related
      ENSMMUP00000032323.3, ENSMMUT00000039237.3
      Conserved Domains (2) summary
      cd18787
      Location:286 → 422
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:54 → 282
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    5. XM_028840706.1 → XP_028696539.1  ATP-dependent RNA helicase DDX19B isoform X1

      UniProtKB/TrEMBL
      A0A5K1VSU2, F6RXW3
      Related
      ENSMMUP00000032324.3, ENSMMUT00000039238.3
      Conserved Domains (2) summary
      cd18787
      Location:316 → 452
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:84 → 312
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    6. XM_028840709.1 → XP_028696542.1  ATP-dependent RNA helicase DDX19B isoform X7

      Conserved Domains (2) summary
      cd18787
      Location:198 → 334
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:1 → 187
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    7. XM_015126516.2 → XP_014982002.1  ATP-dependent RNA helicase DDX19B isoform X8

      Conserved Domains (2) summary
      COG0513
      Location:9 → 327
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cl28899
      Location:1 → 145
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    8. XM_028840710.1 → XP_028696543.1  ATP-dependent RNA helicase DDX19B isoform X8

      Conserved Domains (2) summary
      COG0513
      Location:9 → 327
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cl28899
      Location:1 → 145
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    9. XM_028840708.1 → XP_028696541.1  ATP-dependent RNA helicase DDX19B isoform X6

      Conserved Domains (2) summary
      cd18787
      Location:316 → 404
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:84 → 312
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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