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    CHD5 chromodomain helicase DNA binding protein 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 720712, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD5provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 5provided by VGNC
    Primary source
    VGNC:VGNC:70959
    See related
    Ensembl:ENSMMUG00000016838
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (218349329..218430349)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (5224360..5305426, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674303 Neighboring gene ribosomal protein L22 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene nephrocystin 4 Neighboring gene adherens junctions associated protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      218349329..218430349
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140724.2 → XP_014996210.2  chromodomain-helicase-DNA-binding protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A5F8A0Q8, F7C337
      Related
      ENSMMUP00000070488.1, ENSMMUT00000092117.1
      Conserved Domains (9) summary
      PLN03142
      Location:698 → 1214
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:345 → 387
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:418 → 460
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1388 → 1529
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1732 → 1903
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1298 → 1357
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:150 → 200
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:589 → 642
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:465 → 544
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins

    2. XM_028840636.1 → XP_028696469.1  chromodomain-helicase-DNA-binding protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZMT0, F7C307
      Related
      ENSMMUP00000066486.1, ENSMMUT00000088582.1
      Conserved Domains (9) summary
      PLN03142
      Location:698 → 1214
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:345 → 387
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:418 → 460
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:1388 → 1529
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:1732 → 1903
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:1298 → 1357
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:150 → 200
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:589 → 642
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:465 → 544
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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