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    SPOCK2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708963, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPOCK2provided by VGNC
    Official Full Name
    SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2provided by VGNC
    Primary source
    VGNC:VGNC:106105
    See related
    Ensembl:ENSMMUG00000002122
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SPOCK2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (65689541..65719383)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (60280470..60310914)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15 pseudogene Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene uncharacterized LOC107000165 Neighboring gene uncharacterized LOC100423563 Neighboring gene uncharacterized LOC107000167 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene U7 small nuclear RNA Neighboring gene prosaposin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testican-2
    Names
    SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      65689541..65719383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001105299.4 → XP_001105299.1  testican-2 isoform X1

      UniProtKB/TrEMBL
      F6UWN5, H9YV60
      Conserved Domains (4) summary
      smart00280
      Location:147 → 180
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:312 → 376
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:246 → 277
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:199 → 310
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    2. XM_028826504.1 → XP_028682337.1  testican-2 isoform X1

      UniProtKB/TrEMBL
      F6UWN5, H9YV60
      Related
      ENSMMUP00000002824.2, ENSMMUT00000002991.4
      Conserved Domains (4) summary
      smart00280
      Location:147 → 180
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:312 → 376
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:246 → 277
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:199 → 310
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    3. XM_028826506.1 → XP_028682339.1  testican-2 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QIB9, H9ZFX3
      Related
      ENSMMUP00000047791.1, ENSMMUT00000072017.2
      Conserved Domains (4) summary
      smart00280
      Location:144 → 177
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:309 → 373
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:243 → 274
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:196 → 307
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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