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    VTI1A vesicle transport through interaction with t-SNAREs 1A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696654, updated on 5-Mar-2024

    Summary

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    Gene symbol
    VTI1A
    Gene description
    vesicle transport through interaction with t-SNAREs 1A
    Locus tag
    EGK_20072
    See related
    Ensembl:ENSMMUG00000054123
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VTI1A in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (112972859..113341395)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (108343925..108712183)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 2G-like Neighboring gene acyl-CoA synthetase long chain family member 5 Neighboring gene zinc finger DHHC-type palmitoyltransferase 6 Neighboring gene transcription factor 7 like 2 Neighboring gene uncharacterized LOC107000281 Neighboring gene translationally-controlled tumor protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion with Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle transport through interaction with t-SNAREs homolog 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      112972859..113341395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148192.2 → XP_015003678.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X1

      UniProtKB/TrEMBL
      A0A5F8A241
      Conserved Domains (2) summary
      cd15891
      Location:129 → 190
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    2. XM_015148196.2 → XP_015003682.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X6

      UniProtKB/TrEMBL
      A0A5F8A241
      Conserved Domains (2) summary
      cd15891
      Location:122 → 183
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    3. XM_015148193.2 → XP_015003679.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X2

      UniProtKB/TrEMBL
      A0A5F8A241, A0A5F8AAR7, A0A8J8XZG7, G7N154
      Related
      ENSMMUP00000074015.1, ENSMMUT00000094939.1
      Conserved Domains (2) summary
      cd15891
      Location:122 → 183
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    4. XM_028826833.1 → XP_028682666.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X6

      UniProtKB/TrEMBL
      A0A5F8A241
      Conserved Domains (2) summary
      cd15891
      Location:122 → 183
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    5. XM_015148195.2 → XP_015003681.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X4

      UniProtKB/TrEMBL
      A0A5F8A241
      Conserved Domains (2) summary
      cd15891
      Location:129 → 190
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    6. XM_015148194.2 → XP_015003680.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X5

      UniProtKB/TrEMBL
      A0A5F8A241
      Conserved Domains (2) summary
      cd15891
      Location:129 → 190
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    7. XM_028826832.1 → XP_028682665.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

      UniProtKB/TrEMBL
      A0A5F8A241
      Related
      ENSMMUP00000071966.1, ENSMMUT00000089607.1
      Conserved Domains (2) summary
      cd15891
      Location:129 → 190
      SNARE_Vti1a; SNARE motif of Vti1b-like
      pfam05008
      Location:12 → 90
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    RNA

    1. XR_001447310.2 RNA Sequence

    2. XR_001447309.2 RNA Sequence

    3. XR_001447311.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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