U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DEDD death effector domain containing [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719875, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DEDDprovided by VGNC
    Official Full Name
    death effector domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:71768
    Locus tag
    EGK_01526
    See related
    Ensembl:ENSMMUG00000002010
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DEDD in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (89814903..89826345)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (135851283..135862608, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 3 Neighboring gene protoporphyrinogen oxidase Neighboring gene ubiquitin specific peptidase 21 Neighboring gene ubiquitin-fold modifier conjugating enzyme 1 Neighboring gene nitrilase 1 Neighboring gene prefoldin subunit 2 Neighboring gene kelch domain containing 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extrinsic apoptotic signaling pathway via death domain receptors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    death effector domain-containing protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257441.1 → NP_001244370.1  death effector domain-containing protein

      See identical proteins and their annotated locations for NP_001244370.1

      Status: PROVISIONAL

      Source sequence(s)
      JU337080
      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Related
      ENSMMUP00000070776.1, ENSMMUT00000096721.1
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      89814903..89826345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015113077.2 → XP_014968563.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Related
      ENSMMUP00000066734.1, ENSMMUT00000079903.1
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    2. XM_015113066.2 → XP_014968552.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Related
      ENSMMUP00000075635.1, ENSMMUT00000101195.1
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    3. XM_015113074.2 → XP_014968560.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    4. XM_015113067.2 → XP_014968553.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Related
      ENSMMUP00000078274.1, ENSMMUT00000110256.1
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    5. XM_015113091.2 → XP_014968577.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD

    6. XM_015113058.2 → XP_014968544.1  death effector domain-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
      Related
      ENSMMUP00000078641.1, ENSMMUT00000089427.1
      Conserved Domains (1) summary
      cd08790
      Location:22 → 118
      DED_DEDD; Death Effector Domain of DEDD
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.