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    PARN poly(A)-specific ribonuclease [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712984, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PARNprovided by VGNC
    Official Full Name
    poly(A)-specific ribonucleaseprovided by VGNC
    Primary source
    VGNC:VGNC:99534
    See related
    Ensembl:ENSMMUG00000018849
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PARN in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (14405888..14613229, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (14562755..14769718, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC717393 Neighboring gene uncharacterized LOC114674287 Neighboring gene uncharacterized LOC114674391 Neighboring gene U7 small nuclear RNA Neighboring gene bifunctional apoptosis regulator Neighboring gene group 10 secretory phospholipase A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(A)-specific ribonuclease PARN
    Names
    poly(A)-specific ribonuclease PARN-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      14405888..14613229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841064.1 → XP_028696897.1  poly(A)-specific ribonuclease PARN isoform X1

      UniProtKB/TrEMBL
      G7NPP5
      Conserved Domains (2) summary
      pfam08675
      Location:456 → 530
      RNA_bind; RNA binding domain
      pfam04857
      Location:3 → 408
      CAF1; CAF1 family ribonuclease

    2. XM_028841067.1 → XP_028696900.1  poly(A)-specific ribonuclease PARN isoform X4

      UniProtKB/TrEMBL
      G7NPP5
      Conserved Domains (2) summary
      pfam08675
      Location:412 → 486
      RNA_bind; RNA binding domain
      pfam04857
      Location:3 → 364
      CAF1; CAF1 family ribonuclease

    3. XM_028841066.1 → XP_028696899.1  poly(A)-specific ribonuclease PARN isoform X2

      UniProtKB/TrEMBL
      G7NPP5
      Conserved Domains (2) summary
      pfam08675
      Location:395 → 469
      RNA_bind; RNA binding domain
      pfam04857
      Location:1 → 347
      CAF1; CAF1 family ribonuclease

    4. XM_028841070.1 → XP_028696903.1  poly(A)-specific ribonuclease PARN isoform X7

      Conserved Domains (2) summary
      pfam08675
      Location:321 → 395
      RNA_bind; RNA binding domain
      pfam04857
      Location:2 → 273
      CAF1; CAF1 family ribonuclease

    5. XM_015125652.2 → XP_014981138.1  poly(A)-specific ribonuclease PARN isoform X3

      UniProtKB/TrEMBL
      A0A1D5R4C1, F6XSN7, G7NPP5, H9FV31
      Related
      ENSMMUP00000055157.2, ENSMMUT00000059438.2
      Conserved Domains (2) summary
      pfam04857
      Location:3 → 390
      CAF1; CAF1 family ribonuclease
      pfam08675
      Location:438 → 512
      RNA_bind; RNA binding domain

    6. XM_028841068.1 → XP_028696901.1  poly(A)-specific ribonuclease PARN isoform X5

      UniProtKB/TrEMBL
      G7NPP5
      Conserved Domains (2) summary
      pfam08675
      Location:456 → 530
      RNA_bind; RNA binding domain
      pfam04857
      Location:3 → 408
      CAF1; CAF1 family ribonuclease

    7. XM_028841069.1 → XP_028696902.1  poly(A)-specific ribonuclease PARN isoform X6

      Conserved Domains (2) summary
      pfam04857
      Location:3 → 408
      CAF1; CAF1 family ribonuclease
      cl17169
      Location:456 → 513
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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